Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SBG_0226 | cadA | SBG_0226 | SBG_2334 | Conserved hypothetical protein. | Lysine decarboxylase. | 0.837 |
SBG_0226 | cadB | SBG_0226 | SBG_2333 | Conserved hypothetical protein. | Putative cadaverine/lysine antiporter. | 0.476 |
SBG_0226 | ldcC | SBG_0226 | SBG_0225 | Conserved hypothetical protein. | Lysine decarboxylase. | 0.924 |
SBG_0226 | yieN | SBG_0226 | SBG_3432 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.837 |
cadA | SBG_0226 | SBG_2334 | SBG_0226 | Lysine decarboxylase. | Conserved hypothetical protein. | 0.837 |
cadA | cadB | SBG_2334 | SBG_2333 | Lysine decarboxylase. | Putative cadaverine/lysine antiporter. | 0.907 |
cadA | cadC | SBG_2334 | SBG_2332 | Lysine decarboxylase. | Transcriptional activator cadC. | 0.430 |
cadA | ldcC | SBG_2334 | SBG_0225 | Lysine decarboxylase. | Lysine decarboxylase. | 0.901 |
cadA | lysA | SBG_2334 | SBG_2618 | Lysine decarboxylase. | Diaminopimelate decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family. | 0.820 |
cadA | patA | SBG_2334 | SBG_2853 | Lysine decarboxylase. | Putative aminotransferase; Catalyzes the aminotransferase reaction from putrescine to 2- oxoglutarate, leading to glutamate and 4-aminobutanal, which spontaneously cyclizes to form 1-pyrroline. This is the first step in one of two pathways for putrescine degradation, where putrescine is converted into 4-aminobutanoate (gamma-aminobutyrate or GABA) via 4- aminobutanal. Also functions as a cadaverine transaminase in a a L- lysine degradation pathway to succinate that proceeds via cadaverine, glutarate and L-2-hydroxyglutarate. | 0.905 |
cadA | potE | SBG_2334 | SBG_0590 | Lysine decarboxylase. | Putrescine-ornithine antiporter. | 0.605 |
cadA | yieN | SBG_2334 | SBG_3432 | Lysine decarboxylase. | Conserved hypothetical protein. | 0.908 |
cadA | yjdL_2 | SBG_2334 | SBG_2335 | Lysine decarboxylase. | Putative transmembrane transport protein. | 0.649 |
cadB | SBG_0226 | SBG_2333 | SBG_0226 | Putative cadaverine/lysine antiporter. | Conserved hypothetical protein. | 0.476 |
cadB | cadA | SBG_2333 | SBG_2334 | Putative cadaverine/lysine antiporter. | Lysine decarboxylase. | 0.907 |
cadB | cadC | SBG_2333 | SBG_2332 | Putative cadaverine/lysine antiporter. | Transcriptional activator cadC. | 0.850 |
cadB | ldcC | SBG_2333 | SBG_0225 | Putative cadaverine/lysine antiporter. | Lysine decarboxylase. | 0.613 |
cadB | yjdL_2 | SBG_2333 | SBG_2335 | Putative cadaverine/lysine antiporter. | Putative transmembrane transport protein. | 0.586 |
cadC | cadA | SBG_2332 | SBG_2334 | Transcriptional activator cadC. | Lysine decarboxylase. | 0.430 |
cadC | cadB | SBG_2332 | SBG_2333 | Transcriptional activator cadC. | Putative cadaverine/lysine antiporter. | 0.850 |
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