STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfhAPutative transcriptional regulator. (445 aa)    
Predicted Functional Partners:
qseE_1
Putative sensor kinase protein.
 
 
 0.997
rpoN
RNA polymerase sigma-54 factor (sigma-N).
 
  
 0.955
qseC
Putative two-component system sensor histidine kinase.
   
 0.929
yfhG
Putative membrane protein.
  
  
 0.886
glnB
Nitrogen regulatory protein p-II.
  
 
 0.653
glnL
Two-component system sensory histidine kinase.
 
 0.653
cheA
Chemotaxis protein CheA.
  
 
 0.643
fliM
Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
  
  
 0.639
arcB
Aerobic respiration control sensor protein.
  
 
 0.639
fliG
Flagellar motor switch protein FliG.
  
  
 0.631
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.