STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
qseE_1Putative sensor kinase protein. (480 aa)    
Predicted Functional Partners:
yfhA
Putative transcriptional regulator.
 
 
 0.997
arcB
Aerobic respiration control sensor protein.
 
 
0.935
rpoN
RNA polymerase sigma-54 factor (sigma-N).
     
 0.902
yfhG
Putative membrane protein.
 
   
 0.848
pspC
Phage shock protein C.
  
   0.712
phoB
Phosphate regulon transcriptional regulatory protein PhoB.
 
 
 0.686
ycjF
Putative membrane protein.
  
     0.682
torS
Two-component sensor protein histidine protein kinase.
 
 
0.660
rof
ROF protein.
  
     0.659
ygiX_2
Putative two-component system response regulator.
 
 
 0.636
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.