Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| obgE_1 | rplC | SBG_2929 | SBG_3049 | Putative GTP-binding protein. | 50S ribosomal subunit protein L3. | 0.761 |
| obgE_1 | rplM | SBG_2929 | SBG_2973 | Putative GTP-binding protein. | 50S ribosomal subunit protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.779 |
| obgE_1 | rplR | SBG_2929 | SBG_3033 | Putative GTP-binding protein. | 50S ribosomal subunit protein L18. | 0.515 |
| obgE_1 | rplS | SBG_2929 | SBG_2389 | Putative GTP-binding protein. | 50S ribosomal subunit protein L19. | 0.866 |
| obgE_1 | rplT | SBG_2929 | SBG_1188 | Putative GTP-binding protein. | 50S ribosomal subunit protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.934 |
| obgE_1 | sfhB | SBG_2929 | SBG_2376 | Putative GTP-binding protein. | ftsH suppressor protein SfhB; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 0.881 |
| obgE_1 | thdF | SBG_2929 | SBG_3398 | Putative GTP-binding protein. | Thiophene and furan oxidation protein; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | 0.564 |
| obgE_1 | yjga | SBG_2929 | SBG_3861 | Putative GTP-binding protein. | Conserved hypothetical protein; Belongs to the UPF0307 family. | 0.469 |
| rplC | obgE_1 | SBG_3049 | SBG_2929 | 50S ribosomal subunit protein L3. | Putative GTP-binding protein. | 0.761 |
| rplC | rplM | SBG_3049 | SBG_2973 | 50S ribosomal subunit protein L3. | 50S ribosomal subunit protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
| rplC | rplR | SBG_3049 | SBG_3033 | 50S ribosomal subunit protein L3. | 50S ribosomal subunit protein L18. | 0.999 |
| rplC | rplS | SBG_3049 | SBG_2389 | 50S ribosomal subunit protein L3. | 50S ribosomal subunit protein L19. | 0.990 |
| rplC | rplT | SBG_3049 | SBG_1188 | 50S ribosomal subunit protein L3. | 50S ribosomal subunit protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.993 |
| rplC | sfhB | SBG_3049 | SBG_2376 | 50S ribosomal subunit protein L3. | ftsH suppressor protein SfhB; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 0.624 |
| rplC | thdF | SBG_3049 | SBG_3398 | 50S ribosomal subunit protein L3. | Thiophene and furan oxidation protein; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | 0.698 |
| rplC | yjga | SBG_3049 | SBG_3861 | 50S ribosomal subunit protein L3. | Conserved hypothetical protein; Belongs to the UPF0307 family. | 0.504 |
| rplM | obgE_1 | SBG_2973 | SBG_2929 | 50S ribosomal subunit protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Putative GTP-binding protein. | 0.779 |
| rplM | rplC | SBG_2973 | SBG_3049 | 50S ribosomal subunit protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 50S ribosomal subunit protein L3. | 0.999 |
| rplM | rplR | SBG_2973 | SBG_3033 | 50S ribosomal subunit protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 50S ribosomal subunit protein L18. | 0.999 |
| rplM | rplS | SBG_2973 | SBG_2389 | 50S ribosomal subunit protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 50S ribosomal subunit protein L19. | 0.996 |
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