Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SBG_1205 | gltB | SBG_1205 | SBG_2960 | Conserved hypothetical FAD-binding protein. | Glutamate synthase [NADPH] large chain precursor. | 0.919 |
| SBG_1205 | maeB | SBG_1205 | SBG_2248 | Conserved hypothetical FAD-binding protein. | NADP-dependent malate dehydrogenase (decarboxylating). | 0.709 |
| SBG_1205 | porB | SBG_1205 | SBG_1488 | Conserved hypothetical FAD-binding protein. | Putative pyruvate-flavodoxin oxidoreductase. | 0.964 |
| SBG_1205 | ygaF | SBG_1205 | SBG_2415 | Conserved hypothetical FAD-binding protein. | Putative GAB DTP gene cluster repressor; Catalyzes the dehydrogenation of L-2-hydroxyglutarate (L2HG) to alpha-ketoglutarate and couples to the respiratory chain by feeding electrons from the reaction into the membrane quinone pool. Functions in a L-lysine degradation pathway that proceeds via cadaverine, glutarate and L-2-hydroxyglutarate. Reaction=(S)-2-hydroxyglutarate + a quinone = 2-oxoglutarate + a quinol; Xref=Rhea:RHEA:58664, ChEBI:CHEBI:16782, ChEBI:CHEBI:16810, ChEBI:CHEBI:24646, ChEBI:CHEBI:132124; PhysiologicalDirection=left-to-right; Xref=Rhea:RHEA:58665; Belongs to the L2 [...] | 0.427 |
| csiD_1 | gabD | SBG_2414 | SBG_2416 | Gab protein homolog. | Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | 0.972 |
| csiD_1 | gabP | SBG_2414 | SBG_2418 | Gab protein homolog. | GabA permease (4-amino butyrate transport carrier). | 0.457 |
| csiD_1 | gabT | SBG_2414 | SBG_2417 | Gab protein homolog. | 4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.690 |
| csiD_1 | ygaE | SBG_2414 | SBG_2419 | Gab protein homolog. | Putative transcriptional regulator. | 0.779 |
| csiD_1 | ygaF | SBG_2414 | SBG_2415 | Gab protein homolog. | Putative GAB DTP gene cluster repressor; Catalyzes the dehydrogenation of L-2-hydroxyglutarate (L2HG) to alpha-ketoglutarate and couples to the respiratory chain by feeding electrons from the reaction into the membrane quinone pool. Functions in a L-lysine degradation pathway that proceeds via cadaverine, glutarate and L-2-hydroxyglutarate. Reaction=(S)-2-hydroxyglutarate + a quinone = 2-oxoglutarate + a quinol; Xref=Rhea:RHEA:58664, ChEBI:CHEBI:16782, ChEBI:CHEBI:16810, ChEBI:CHEBI:24646, ChEBI:CHEBI:132124; PhysiologicalDirection=left-to-right; Xref=Rhea:RHEA:58665; Belongs to the L2 [...] | 0.996 |
| gabD | csiD_1 | SBG_2416 | SBG_2414 | Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | Gab protein homolog. | 0.972 |
| gabD | gabP | SBG_2416 | SBG_2418 | Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | GabA permease (4-amino butyrate transport carrier). | 0.732 |
| gabD | gabT | SBG_2416 | SBG_2417 | Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | 4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.993 |
| gabD | gltB | SBG_2416 | SBG_2960 | Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | Glutamate synthase [NADPH] large chain precursor. | 0.416 |
| gabD | porB | SBG_2416 | SBG_1488 | Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | Putative pyruvate-flavodoxin oxidoreductase. | 0.628 |
| gabD | puuE_2 | SBG_2416 | SBG_3159 | Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | 4-aminobutyrate aminotransferase. | 0.971 |
| gabD | ygaE | SBG_2416 | SBG_2419 | Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | Putative transcriptional regulator. | 0.463 |
| gabD | ygaF | SBG_2416 | SBG_2415 | Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | Putative GAB DTP gene cluster repressor; Catalyzes the dehydrogenation of L-2-hydroxyglutarate (L2HG) to alpha-ketoglutarate and couples to the respiratory chain by feeding electrons from the reaction into the membrane quinone pool. Functions in a L-lysine degradation pathway that proceeds via cadaverine, glutarate and L-2-hydroxyglutarate. Reaction=(S)-2-hydroxyglutarate + a quinone = 2-oxoglutarate + a quinol; Xref=Rhea:RHEA:58664, ChEBI:CHEBI:16782, ChEBI:CHEBI:16810, ChEBI:CHEBI:24646, ChEBI:CHEBI:132124; PhysiologicalDirection=left-to-right; Xref=Rhea:RHEA:58665; Belongs to the L2 [...] | 0.894 |
| gabP | csiD_1 | SBG_2418 | SBG_2414 | GabA permease (4-amino butyrate transport carrier). | Gab protein homolog. | 0.457 |
| gabP | gabD | SBG_2418 | SBG_2416 | GabA permease (4-amino butyrate transport carrier). | Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | 0.732 |
| gabP | gabT | SBG_2418 | SBG_2417 | GabA permease (4-amino butyrate transport carrier). | 4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.655 |
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