STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yqaBConserved hypothetical protein. (188 aa)    
Predicted Functional Partners:
yqaA
Putative membrane protein.
  
    0.871
corE
Putative membrane protein.
      
 0.829
SBG_1540
Putative maltose phosphorylase.
  
 0.734
slyX
Conserved hypothetical protein.
      
 0.625
yafC
Hypothetical transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
      
 0.616
gshA
Gamma-glutamylcysteine synthetase; Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily.
       0.566
ydcF
Conserved hypothetical protein.
  
  
 0.522
ygcX
Putative glucarate dehydratase 1.
      
 0.465
yhjE
Hypothetical metabolite transport protein.
      
 0.465
gltS
Glutamate permease.
   
  
 0.460
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.