STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ygaDConserved hypothetical protein; Belongs to the CinA family. (165 aa)    
Predicted Functional Partners:
yfaY
Conserved hypothetical protein; Belongs to the CinA family.
   
 0.985
nadD
Alpha-ribazole phosphatase (fragment); This CDS has suffered a deletion removing the very 5' end of the gene and also includes a frameshift mutation.
 
 
 0.945
nadR
Conserved hypothetical transcriptional regulator.
    
 0.941
pncB
Nicotinate phosphoribosyltransferase; Catalyzes the synthesis of beta-nicotinate D-ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP; Belongs to the NAPRTase family.
  
 
 0.917
surE
Stationary-phase survival protein.
 
  
  0.914
nadC
Nicotinate-nucleotide pyrophosphorylase; Belongs to the NadC/ModD family.
     
 0.912
mazG
Conserved hypothetical protein.
  
  
  0.912
ushA
UDP-sugar hydrolase; Belongs to the 5'-nucleotidase family.
   
 
  0.902
yfkN
Hypothetical protein.
   
 
  0.902
yrfG
Putative hydrolase.
    
  0.901
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.