Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| dadA | norW | SBG_1662 | SBG_2461 | D-amino acid dehydrogenase. | Putative rubredoxin reductase; One of at least two accessory proteins for anaerobic nitric oxide (NO) reductase. Reduces the rubredoxin moiety of NO reductase. | 0.662 |
| fdhF | nirD | SBG_3723 | SBG_3083 | Formate dehydrogenase H; This CDS contains a UGA stop codon which is readthrough as an opal codon by the selenocysteine tRNA. | Nitrite reductase (NAD(P)H) small subunit. | 0.499 |
| fdhF | norW | SBG_3723 | SBG_2461 | Formate dehydrogenase H; This CDS contains a UGA stop codon which is readthrough as an opal codon by the selenocysteine tRNA. | Putative rubredoxin reductase; One of at least two accessory proteins for anaerobic nitric oxide (NO) reductase. Reduces the rubredoxin moiety of NO reductase. | 0.921 |
| fdx | norW | SBG_2313 | SBG_2461 | Ferredoxin. | Putative rubredoxin reductase; One of at least two accessory proteins for anaerobic nitric oxide (NO) reductase. Reduces the rubredoxin moiety of NO reductase. | 0.711 |
| hcr | norV_3 | SBG_0797 | SBG_2460 | NADH oxidoreductase Hcr. | Putative flavoprotein. | 0.595 |
| hcr | norW | SBG_0797 | SBG_2461 | NADH oxidoreductase Hcr. | Putative rubredoxin reductase; One of at least two accessory proteins for anaerobic nitric oxide (NO) reductase. Reduces the rubredoxin moiety of NO reductase. | 0.719 |
| hisI | norW | SBG_1905 | SBG_2461 | phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase. | Putative rubredoxin reductase; One of at least two accessory proteins for anaerobic nitric oxide (NO) reductase. Reduces the rubredoxin moiety of NO reductase. | 0.675 |
| napA | nirD | SBG_2056 | SBG_3083 | Putative nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | Nitrite reductase (NAD(P)H) small subunit. | 0.933 |
| napA | norW | SBG_2056 | SBG_2461 | Putative nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | Putative rubredoxin reductase; One of at least two accessory proteins for anaerobic nitric oxide (NO) reductase. Reduces the rubredoxin moiety of NO reductase. | 0.898 |
| nirD | fdhF | SBG_3083 | SBG_3723 | Nitrite reductase (NAD(P)H) small subunit. | Formate dehydrogenase H; This CDS contains a UGA stop codon which is readthrough as an opal codon by the selenocysteine tRNA. | 0.499 |
| nirD | napA | SBG_3083 | SBG_2056 | Nitrite reductase (NAD(P)H) small subunit. | Putative nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | 0.933 |
| nirD | norW | SBG_3083 | SBG_2461 | Nitrite reductase (NAD(P)H) small subunit. | Putative rubredoxin reductase; One of at least two accessory proteins for anaerobic nitric oxide (NO) reductase. Reduces the rubredoxin moiety of NO reductase. | 0.850 |
| norV_3 | hcr | SBG_2460 | SBG_0797 | Putative flavoprotein. | NADH oxidoreductase Hcr. | 0.595 |
| norV_3 | norW | SBG_2460 | SBG_2461 | Putative flavoprotein. | Putative rubredoxin reductase; One of at least two accessory proteins for anaerobic nitric oxide (NO) reductase. Reduces the rubredoxin moiety of NO reductase. | 0.994 |
| norV_3 | ygaA | SBG_2460 | SBG_2459 | Putative flavoprotein. | Putative sigma-54-dependent transriptional regulator. | 0.941 |
| norW | dadA | SBG_2461 | SBG_1662 | Putative rubredoxin reductase; One of at least two accessory proteins for anaerobic nitric oxide (NO) reductase. Reduces the rubredoxin moiety of NO reductase. | D-amino acid dehydrogenase. | 0.662 |
| norW | fdhF | SBG_2461 | SBG_3723 | Putative rubredoxin reductase; One of at least two accessory proteins for anaerobic nitric oxide (NO) reductase. Reduces the rubredoxin moiety of NO reductase. | Formate dehydrogenase H; This CDS contains a UGA stop codon which is readthrough as an opal codon by the selenocysteine tRNA. | 0.921 |
| norW | fdx | SBG_2461 | SBG_2313 | Putative rubredoxin reductase; One of at least two accessory proteins for anaerobic nitric oxide (NO) reductase. Reduces the rubredoxin moiety of NO reductase. | Ferredoxin. | 0.711 |
| norW | hcr | SBG_2461 | SBG_0797 | Putative rubredoxin reductase; One of at least two accessory proteins for anaerobic nitric oxide (NO) reductase. Reduces the rubredoxin moiety of NO reductase. | NADH oxidoreductase Hcr. | 0.719 |
| norW | hisI | SBG_2461 | SBG_1905 | Putative rubredoxin reductase; One of at least two accessory proteins for anaerobic nitric oxide (NO) reductase. Reduces the rubredoxin moiety of NO reductase. | phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase. | 0.675 |
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