STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hydNElectron transport protein. (181 aa)    
Predicted Functional Partners:
hycE
Formate hydrogenlyase subunit 5.
 
 
 0.964
porB
Putative pyruvate-flavodoxin oxidoreductase.
  
 
 0.763
hypf
Hydrogenase maturation protein; Involved in the maturation of [NiFe] hydrogenases. Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases. HypF functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide.
     
 0.744
fdhF
Formate dehydrogenase H; This CDS contains a UGA stop codon which is readthrough as an opal codon by the selenocysteine tRNA.
 
 0.697
hycG
Formate hydrogenlyase subunit 7.
 
 
 0.683
hycI
Hydrogenase 3 maturation protease.
 
    0.658
hycD
Formate hydrogenlyase subunit 4.
 
 
 0.645
hycF
Formate hydrogenlyase subunit 6.
 
 
 0.644
hycC
Formate hydrogenlyase subunit 3.
 
 
 0.633
hycH
Formate hydrogenlyase maturation protein.
 
    0.600
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.