STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hycDFormate hydrogenlyase subunit 4. (307 aa)    
Predicted Functional Partners:
hycG
Formate hydrogenlyase subunit 7.
 
 
 0.999
hycE
Formate hydrogenlyase subunit 5.
 
 
 0.999
hycC
Formate hydrogenlyase subunit 3.
 
 
 0.999
hycF
Formate hydrogenlyase subunit 6.
 
 
 0.997
hycB
Formate hydrogenlyase subunit 2.
 
 
 0.995
hycI
Hydrogenase 3 maturation protease.
 
  
 0.990
hycH
Formate hydrogenlyase maturation protein.
 
  
 0.972
nuoC
NADH dehydrogenase I chain C; chain D; Belongs to the complex I 49 kDa subunit family.
 
 
 0.968
porB
Putative pyruvate-flavodoxin oxidoreductase.
  
 
 0.887
fdhF
Formate dehydrogenase H; This CDS contains a UGA stop codon which is readthrough as an opal codon by the selenocysteine tRNA.
  
 0.839
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.