STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hycBFormate hydrogenlyase subunit 2. (203 aa)    
Predicted Functional Partners:
hycD
Formate hydrogenlyase subunit 4.
 
 
 0.995
hycF
Formate hydrogenlyase subunit 6.
 
 
 0.994
hycE
Formate hydrogenlyase subunit 5.
 
 
 0.991
hycC
Formate hydrogenlyase subunit 3.
 
 
 0.990
hycG
Formate hydrogenlyase subunit 7.
 
 
 0.987
hycI
Hydrogenase 3 maturation protease.
 
  
 0.982
hycH
Formate hydrogenlyase maturation protein.
 
  
 0.961
fdhF
Formate dehydrogenase H; This CDS contains a UGA stop codon which is readthrough as an opal codon by the selenocysteine tRNA.
 
 
 0.867
hycA
Formate hydrogenlyase regulatory protein.
  
  
 0.819
dmsB-2
Anaerobic dimethyl sulfoxide reductase chain B.
 
     0.765
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.