STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prgIPathogenicity 1 island effector protein. (80 aa)    
Predicted Functional Partners:
prgK
Pathogenicity 1 island effector protein.
  
 
 0.999
prgJ
Pathogenicity 1 island effector protein.
  
 
 0.999
prgH
Pathogenicity 1 island effector protein.
  
 
 0.999
invG
Secretory protein (associated with virulence).
  
 
 0.999
spaM
Secretory protein (associated with virulence).
   
  
 0.997
sipD
Pathogenicity island 1 effector protein.
  
 
 0.995
spaN
Surface presentation of antigens protein (associated with type III secretion and virulence).
   
  
 0.990
spaP
Secretory protein (associated with virulence).
  
 
 0.970
spaI
Secretory apparatus ATP synthase (associated with virulence).
   
  
 0.944
spaT
Unknown function.
   
  
 0.942
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.