STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sicPType III secreted effector protein, tyrosine phosphatase (pseudogene). (130 aa)    
Predicted Functional Partners:
SBG_1475
Putative phosphatase; The.
  
 
 0.949
spak
Secretory protein (associated with virulence).
  
  
 0.933
spaT
Unknown function.
  
  
 0.842
sipA
Pathogenicity island 1 effector protein (function unknown).
  
  
 0.757
prgJ
Pathogenicity 1 island effector protein.
   
  
 0.725
spaM
Secretory protein (associated with virulence).
  
  
 0.691
sipF
Putative acyl carrier protein.
  
  
 0.654
sipD
Pathogenicity island 1 effector protein.
  
  
 0.638
prgK
Pathogenicity 1 island effector protein.
  
  
 0.590
spaP
Secretory protein (associated with virulence).
  
  
 0.589
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.