STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
emrB_1Putative membrane transport protein. (402 aa)    
Predicted Functional Partners:
cysL
Putative LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
   
 0.931
yacH
Putative exported protein.
      
 0.832
yobD
Putative membrane protein.
      
 0.832
SBG_2524
Conserved hypothetical protein.
       0.813
emrA
Multidrug resistance protein A.
 
 
 0.676
bcr
Bicyclomycin resistance protein.
  
     0.464
emrD
Multidrug resistance protein D.
  
     0.436
ydhC
Putative integral membrane transport protein.
  
     0.429
aroQ
Putative chorismate mutase; Catalyzes the Claisen rearrangement of chorismate to prephenate.
  
    0.423
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.