Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
emrB_1Putative membrane transport protein. (402 aa)    
Predicted Functional Partners:
SBG_2524
Conserved hypothetical protein.
       0.825
cysL
Putative LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
   
 0.825
emrA
Multidrug resistance protein A.
 
 
 0.728
yobD
Putative membrane protein.
      
 0.681
bcr
Bicyclomycin resistance protein.
  
   
 0.476
emrD
Multidrug resistance protein D.
  
   
 0.448
ydhC
Putative integral membrane transport protein.
  
   
 0.442
aroQ
Putative chorismate mutase; Catalyzes the Claisen rearrangement of chorismate to prephenate.
  
    0.422
yacH
Putative exported protein.
      
 0.413
SBG_3703
Putative type-I secretion protein.
 
 
 0.403
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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