Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SBG_1839 | gcvA | SBG_1839 | SBG_2590 | Nitrogen assimilation regulatory protein (pseudogene); This CDS appears to have been subject to a deletion event removing the 3' end. | Regulatory protein for glycine cleavage pathway. | 0.629 |
| SBG_1839 | lysR | SBG_1839 | SBG_2619 | Nitrogen assimilation regulatory protein (pseudogene); This CDS appears to have been subject to a deletion event removing the 3' end. | Transcriptional activator protein LysR; Belongs to the LysR transcriptional regulatory family. | 0.727 |
| fadR | gcvA | SBG_1664 | SBG_2590 | Fatty acid-fatty acyl responsive DNA-binding protein. | Regulatory protein for glycine cleavage pathway. | 0.618 |
| fadR | seqA | SBG_1664 | SBG_0587 | Fatty acid-fatty acyl responsive DNA-binding protein. | seqA protein. | 0.762 |
| fadR | yejL | SBG_1664 | SBG_2041 | Fatty acid-fatty acyl responsive DNA-binding protein. | Conserved hypothetical protein; Belongs to the UPF0352 family. | 0.772 |
| gcvA | SBG_1839 | SBG_2590 | SBG_1839 | Regulatory protein for glycine cleavage pathway. | Nitrogen assimilation regulatory protein (pseudogene); This CDS appears to have been subject to a deletion event removing the 3' end. | 0.629 |
| gcvA | fadR | SBG_2590 | SBG_1664 | Regulatory protein for glycine cleavage pathway. | Fatty acid-fatty acyl responsive DNA-binding protein. | 0.618 |
| gcvA | gcvR | SBG_2590 | SBG_2270 | Regulatory protein for glycine cleavage pathway. | Glycine cleavage system transcriptional repressor. | 0.919 |
| gcvA | lysR | SBG_2590 | SBG_2619 | Regulatory protein for glycine cleavage pathway. | Transcriptional activator protein LysR; Belongs to the LysR transcriptional regulatory family. | 0.524 |
| gcvA | oxyR | SBG_2590 | SBG_3615 | Regulatory protein for glycine cleavage pathway. | Hydrogen peroxide-inducible regulon activator; Belongs to the LysR transcriptional regulatory family. | 0.705 |
| gcvA | seqA | SBG_2590 | SBG_0587 | Regulatory protein for glycine cleavage pathway. | seqA protein. | 0.574 |
| gcvA | sstT | SBG_2590 | SBG_2860 | Regulatory protein for glycine cleavage pathway. | Putative membrane transport protein; Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system). Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. | 0.621 |
| gcvA | yejL | SBG_2590 | SBG_2041 | Regulatory protein for glycine cleavage pathway. | Conserved hypothetical protein; Belongs to the UPF0352 family. | 0.654 |
| gcvA | ygdD | SBG_2590 | SBG_2589 | Regulatory protein for glycine cleavage pathway. | Conserved hypothetical protein. | 0.894 |
| gcvA | ygdE | SBG_2590 | SBG_2588 | Regulatory protein for glycine cleavage pathway. | Conserved hypothetical protein. | 0.777 |
| gcvR | gcvA | SBG_2270 | SBG_2590 | Glycine cleavage system transcriptional repressor. | Regulatory protein for glycine cleavage pathway. | 0.919 |
| gcvR | sstT | SBG_2270 | SBG_2860 | Glycine cleavage system transcriptional repressor. | Putative membrane transport protein; Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system). Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. | 0.410 |
| lysR | SBG_1839 | SBG_2619 | SBG_1839 | Transcriptional activator protein LysR; Belongs to the LysR transcriptional regulatory family. | Nitrogen assimilation regulatory protein (pseudogene); This CDS appears to have been subject to a deletion event removing the 3' end. | 0.727 |
| lysR | gcvA | SBG_2619 | SBG_2590 | Transcriptional activator protein LysR; Belongs to the LysR transcriptional regulatory family. | Regulatory protein for glycine cleavage pathway. | 0.524 |
| oxyR | gcvA | SBG_3615 | SBG_2590 | Hydrogen peroxide-inducible regulon activator; Belongs to the LysR transcriptional regulatory family. | Regulatory protein for glycine cleavage pathway. | 0.705 |
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