STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppdAPrepilin peptidase dependent protein A precursor. (156 aa)    
Predicted Functional Partners:
ppdB
Prepilin peptidase dependent protein B precursor.
 
 
 0.997
ppdC
Prepilin peptidase dependent protein C precursor.
     
 0.936
hofC
Protein transport protein HofC.
  
  
 0.924
ppdD
Prepilin peptidase dependent protein D precursor.
 
 
 
 0.851
hofB
Protein transport protein HofB.
  
 
 0.836
rcsF
RcsF protein; Essential component of the Rcs signaling system, which controls transcription of numerous genes. Plays a role in signal transduction from the cell surface to the histidine kinase RcsC. May detect outer membrane defects; Belongs to the RcsF family.
  
     0.771
yacC
Conserved hypothetical protein.
  
   
 0.770
yiiQ
Conserved hypothetical protein.
  
     0.766
sxy
Conserved hypothetical protein.
  
     0.763
yiaF
Conserved hypothetical protein.
  
     0.761
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.