STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ygeDPutative membrane protein. (398 aa)    
Predicted Functional Partners:
aas
2-acylglycerophosphoethanolamine acyl transferase/acyl carrier protein synthetase.
   
 0.993
flhC
Flagellar transcriptional activator.
  
     0.608
ybdZ
Conserved hypothetical protein.
  
 
 0.516
flhD
Flagellar transcriptional activator FlhD; Functions in complex with FlhC as a master transcriptional regulator that regulates transcription of several flagellar and non- flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways; Belongs to the FlhD family.
  
     0.510
ydgH_2
Putative exported protein.
  
     0.508
entE
2,3-dihydroxybenzoate-AMP ligase.
 
  
 0.454
rne
Ribonuclease E.
   
    0.434
yjga
Conserved hypothetical protein; Belongs to the UPF0307 family.
  
     0.433
elaB_2
Conserved hypothetical protein.
  
     0.423
holA
DNA polymerase III, delta subunit.
  
    0.417
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.