STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mscS_1Putative membrane protein. (286 aa)    
Predicted Functional Partners:
rimK
Ribosomal protein S6 modification protein; Belongs to the RimK family.
 
     0.633
yrbG
Putative membrane protein.
 
    0.552
allS_2
Hypothetical lysR-family transcriptional regulator.
  
    0.500
SBG_2667
Hypothetical protein.
       0.497
SBG_2668
Conserved hypothetical protein.
       0.460
argO
Putative membrane transport protein.
     
 0.458
gcvP
Glycine dehydrogenase (decarboxylating); Belongs to the GcvP family.
   
    0.450
SBG_2663
Conserved hypothetical protein.
     
 0.447
fdrA
Membrane transport protein.
       0.442
garP
Putative metabolite transport protein.
       0.440
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.