STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerD_1Integrase. (345 aa)    
Predicted Functional Partners:
gpA
Bacteriophage replication protein.
 
  
 0.944
SBG_2828
Putative major phage capside protein.
  
    0.909
SBG_2829
Putative phage protein V; Also gpV.
  
  
 0.904
SBG_2842
Phage regulatory protein.
  
    0.886
gpQ
Putative capsid completion protein.
  
    0.881
gpN
Putative phage tail completion protein.
  
    0.861
gpS
Tail completion protein S.
  
    0.850
SBG_2818
Phage tail protein.
  
  
 0.829
gp26
Phage late control gene D.
  
    0.801
gpU
Phage tail tape measure protein.
  
    0.795
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.