STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
allS_1Putative LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (298 aa)    
Predicted Functional Partners:
yhaK
Conserved hypothetical protein.
 
 
 
 0.729
SBG_2869
Conserved hypothetical protein.
  
     0.542
ompX
Outer membrane protein X precursor.
  
     0.529
SBG_1710
Putative exported protein.
  
     0.516
yijO
Putative AraC-family transcriptional regulator.
   
  
 0.461
ygdR_1
Putative lipoprotein.
  
     0.453
abgR
Putative LysR-family transcriptional regulatory protein; Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon.
  
     0.441
cmpR
Putative transcriptional regulator.
  
   
 0.438
yebZ
Putative cation transporter.
  
     0.425
yhhW_1
Conserved hypothetical protein; Belongs to the pirin family.
  
 
 
 0.411
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.