STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
garR2-hydroxy-3-oxopropionate reductase; Catalyzes the reduction of tatronate semialdehyde to D- glycerate; Belongs to the HIBADH-related family. 2-hydroxy-3- oxopropionate reductase subfamily. (294 aa)    
Predicted Functional Partners:
garL
5-keto-4-deoxy-D-glucarate aldolase; Belongs to the HpcH/HpaI aldolase family.
 
 
 0.982
glxK_1
Conserved hypothetical protein.
  
 
 0.974
barA
Sensor protein BarA (pseudogene); 2 probable transmembrane helices predicted for SBG2573 by TMHMM2.0 at aa 10-32 and 177-199; Belongs to the glycerate kinase type-1 family.
  
 
 0.933
yiaE
Putative 2-hydroxyacid dehydrogenase; Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate into glycolate and glycerate, respectively. Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. GhrB subfamily.
 
  
 0.918
glxK_3
Conserved hypothetical protein; Belongs to the glycerate kinase type-1 family.
  
 
 0.908
ghrA_2
Putative 2-hydroxyacid dehydrogenase in phoh-csgg intergenic region.
    
  0.901
hyi
Putative hydroxypyruvate isomerase.
  
 0.606
iciA
Chromosome intitiation inhibitor; Controls the transcription of genes involved in arginine and lysine metabolism; Belongs to the LysR transcriptional regulatory family.
      
 0.495
SBG_1505
Hypothetical protein.
  
  
 0.479
ygcX
Putative glucarate dehydratase 1.
 
  
 0.408
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.