STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
garL5-keto-4-deoxy-D-glucarate aldolase; Belongs to the HpcH/HpaI aldolase family. (256 aa)    
Predicted Functional Partners:
ygcX
Putative glucarate dehydratase 1.
 
 
 0.987
garR
2-hydroxy-3-oxopropionate reductase; Catalyzes the reduction of tatronate semialdehyde to D- glycerate; Belongs to the HIBADH-related family. 2-hydroxy-3- oxopropionate reductase subfamily.
 
 
 0.982
garD
D-galactarate dehydratase.
 
 
  0.935
hpcG
2-oxo-hepta-3-ene-1,7-dioic acid hydratase.
  
 0.917
glxK_1
Conserved hypothetical protein.
  
  
 0.915
hpcD
5-carboxymethyl-2-hydroxymuconate delta-isomerase.
 
  
 0.794
hpcB
3,4-dihydroxyphenylacetate 2,3-dioxygenase.
 
  
 0.767
ygcY
Putative glucarate dehydratase 2.
 
 
 0.730
Hgd
Putative oxidoreductase.
  
 
  0.600
ygcZ
Putative glucarate transporter.
  
  
 0.480
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.