STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBG_2899Putative membrane permease. (345 aa)    
Predicted Functional Partners:
SBG_3577
Conserved integral membrane protein.
 
     0.629
yjjQ
Conserved hypothetical regulatory protein.
  
     0.595
wcaH
Putative O-antigen biosynthesis protein.
  
    0.549
SBOV07181_1
Putative pectin esterase precursor.
  
     0.535
yraR_1
Conserved hypothetical protein.
       0.520
malM
Maltose operon periplasmic protein.
  
     0.500
SBG_0711
Putative membrane protein.
  
     0.458
trmB
Conserved hypothetical protein; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.
   
    0.457
SBG_0800
Conserved hypothetical protein.
   
    0.456
yacK
Putative multicopper oxidase precursor.
  
  
 0.448
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.