STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dacBPenicillin-binding protein (D-alanyl-D-alanine carboxypeptidase). (477 aa)    
Predicted Functional Partners:
dacC
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6 precursor).
     
 0.930
fmtA
Putative exported protein; Belongs to the peptidase S12 family. YfeW subfamily.
  
  
 0.921
dacA
D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
     
 0.913
dacD
Penicillin-binding protein; Belongs to the peptidase S11 family.
     
 0.913
ldcA_3
Conserved hypothetical protein.
 
  
 0.735
ycbB
Putative exported protein.
  
  
 0.588
ftsI
Penicillin-binding protein 3 precursor; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum.
     
 0.571
ompA
Outer membrane protein A; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
  
     0.564
ycdY_2
Conserved hypothetical protein.
  
     0.563
mtgA
Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors. Belongs to the glycosyltransferase 51 family.
     
 0.561
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.