STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yhbHPutative sigma(54) modulation protein. (95 aa)    
Predicted Functional Partners:
rpmI
50S ribosomal subunit protein L35; Belongs to the bacterial ribosomal protein bL35 family.
 
 
   0.896
rpmC
50S ribosomal subunit protein L29; Belongs to the universal ribosomal protein uL29 family.
  
 
 
 0.896
rpsU
30S ribosomal subunit protein S21.
   
 
 0.887
rpmA
50S ribosomal subunit protein L27.
   
 
 0.882
rpsI
30S ribosomal subunit protein S9; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.882
rpsE
30S ribosomal subunit protein S5.
    
 
 0.881
rpmG
50S ribosomal subunit protein L33.
   
   0.877
rpsP
30S ribosomal subunit protein S16; Belongs to the bacterial ribosomal protein bS16 family.
    
 
 0.876
rpsD
30S ribosomal subunit protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
 
 0.876
rplO
50S ribosomal subunit protein L15.
    
 
 0.876
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.