STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBG_2955Hypothetical protein; That the database similarity is weak and does not cover the whole sequence. (810 aa)    
Predicted Functional Partners:
SBG_2954
Putative exported protein; No significant database hits. Highly similar to CDS SBG2952 69.615% identity in 260 aa overlap and SBG2953 96.875% identity in 256 aa overlap.
       0.750
gpA
Bacteriophage replication protein.
  
    0.577
SBG_2953
Putative exported protein; No significant database hits. Highly similar to CDS SBG2952 69.615% identity in 260 aa overlap and SBG2954 96.875% identity in 256 aa overlap.
       0.572
SBG_2952
Putative exported protein; No significant database hits. Highly similar to the two downstream CDS SBG2953 69.615% identity in 260 aa overlap and SBG2954 71.538% identity in 260 aa overlap.
       0.463
SBG_1235
Type VI secretion protein (DotU).
 
    0.435
SBG_2721
Hypothetical protein; The similarity to the database match is very low.
 
    0.428
SBG_2828
Putative major phage capside protein.
 
    0.426
mtgA
Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors. Belongs to the glycosyltransferase 51 family.
       0.418
elbB_2
Conserved hypothetical protein.
       0.418
gpR
Terminase, endonuclease subunit.
 
    0.414
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.