STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dmlR_1Putative LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (309 aa)    
Predicted Functional Partners:
abgR
Putative LysR-family transcriptional regulatory protein; Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon.
  
     0.731
helD
Helicase IV (75 kD helicase).
  
    0.716
gltR_2
Putative regulatory protein; Belongs to the LysR transcriptional regulatory family.
  
     0.699
ydcI
Putative LysR0-family transcriptional regulatory protein.
  
     0.692
gltR_1
Putative LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.677
lrhA
NADH dehydrogenase operon transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.669
tdcA
TDC operon transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
     0.638
cysB
Cys regulon transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
     0.625
parC
Topoisomerase IV subunit A.
   
    0.611
yaeQ
Conserved hypothetical protein.
   
    0.600
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.