Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yedYConserved hypothetical protein. (334 aa)    
Predicted Functional Partners:
yedZ_1
Putative membrane protein.
 
  
 0.999
bisC
Biotin sulfoxide reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
      
 0.681
yhdH
Putative oxidoreductase.
     
 0.634
hiuH
Putative exported protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
  
   0.614
yeaA
Conserved hypothetical protein; Belongs to the MsrB Met sulfoxide reductase family.
     
 0.573
yjfM
Conserved hypothetical protein.
  
   
 0.536
moaE
Molybdopterin converting factor, subunit 2.
 
   
 0.478
moeA
Molybdopterin biosynthesis MoeA protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.
 
 
 
 0.453
yhdA
Putative lipoprotein.
       0.433
ycbX
Conserved hypothetical protein.
  
 
 0.426
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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