STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fisFis DNA-binding protein; Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters; Belongs to the transcriptional regulatory Fis family. (98 aa)    
Predicted Functional Partners:
yhdG
Conserved hypothetical protein.
  
  
 0.957
cap
Cyclic AMP receptor protein,catabolite gene activator.
  
   
 0.876
yohI
Conserved hypothetical protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U16 in tRNAs. Belongs to the Dus family. DusC subfamily.
  
  
 0.628
yjbN
Conserved hypothetical protein.
  
  
 0.628
cph2
Exported protein; The PFAM motifs to PF03707 MHYT, Bacterial signalling protein N terminal repeats.
   
 
 0.575
typA
GTP-binding protein.
   
  
 0.557
priB
Primosomal replication protein N.
   
    0.556
yhdJ
Putative adenine-specific DNA-modification methylase; Belongs to the N(4)/N(6)-methyltransferase family.
       0.545
rpsR
30s ribosomal subunit protein S18; Belongs to the bacterial ribosomal protein bS18 family.
   
    0.534
hha
Haemolysin expression modulating protein.
      
 0.525
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.