STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yhdVPutative lipoprotein. (73 aa)    
Predicted Functional Partners:
yjeJ
Hypothetical protein.
      
 0.885
spy
Putative exported protein.
   
    0.597
mdtC_1
Putative RND-family transporter protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
   
    0.585
SBG_1946
Putative efflux system protein.
   
    0.567
cpxP
Extracytoplasmic stress protein for protein-mediated toxicities.
   
    0.542
yegN
Putative RND-family transporter protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. MdtB subfamily.
   
    0.540
yihP_2
Putative membrane permease.
      
 0.516
pdhR_4
Hypothetical 20.8 kDa protein in rbsr-rrsc intergenic region; Putative GntR-family transcriptional regulator.
      
 0.495
acrE
Acriflavin resistance protein E.
  
    0.459
acrF
Acriflavin resistance protein F.
  
    0.446
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.