STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
capCyclic AMP receptor protein,catabolite gene activator. (210 aa)    
Predicted Functional Partners:
cyaA
Adenylate cyclase; Belongs to the adenylyl cyclase class-1 family.
  
   
 0.970
rpoD
RNA polymerase sigma-70 factor.
    
 
 0.947
rpoB
DNA-directed RNA polymerase, beta-subunit; Belongs to the RNA polymerase beta chain family.
    
 
 0.898
rpoA
DNA-directed RNA polymerase alpha chain.
   
   0.895
rpoC
DNA-directed RNA polymerase, beta'-subunit.
    
 
 0.881
fis
Fis DNA-binding protein; Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters; Belongs to the transcriptional regulatory Fis family.
  
   
 0.876
rpoZ
DNA-directed RNA polymerase omega chain; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.866
rpoS
RNA polymerase sigma subunit RpoS (sigma-38); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
    
 
 0.864
lrp
Leucine-responsive regulatory protein.
   
  
 0.828
csrA
Carbon storage regulator; Belongs to the CsrA/RsmA family.
      
 0.819
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.