STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBG_3141Putative membrane protein. (323 aa)    
Predicted Functional Partners:
SBG_1862
Putative inner membrane protein.
     
  0.900
SBG_1863
Putative inner membrane protein.
     
  0.900
php
Puative phophotriesterase.
 
    0.882
SBG_3140
Hypothetical protein.
 
    0.829
rbsK_2
Putative ribokinase.
  
    0.618
SBG_1220
Putative pathogenicity island protein.
 
    0.575
bigA
Putative surface-exposed virulence protein.
  
     0.467
lpfE
Fimbrial protein.
  
     0.464
SBG_3143
Conserved hypothetical protein.
       0.461
SBG_1511
Invasin-like protein.
 
     0.451
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.