STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ugpBGlycerol-3-phosphate-binding periplasmic protein. (438 aa)    
Predicted Functional Partners:
ugpA
Glycerol-3-phosphate transport system permease protein.
 
 0.996
ugpE
sn-Glycerol-3-phosphate transport system permease protein; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
 
 0.994
ugpC
sn-Glycerol-3-phosphate transport ATP-binding protein; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family.
 
 0.993
ycjO
ABC transporter, membrane permease.
 
 
 0.841
ycjP
ABC transporter, membrane permease.
 
 
 0.839
SBG_1521
ABC transporter, membrane permease.
 
 
 0.834
ugpQ
Glycerophosphoryl diester phosphodiesterase.
 
  
 0.754
malK_1
ABC transporter ATP-binding protein.
 
 
 0.751
ugpC_2
ABC transporter, ATP-binding component; Belongs to the ABC transporter superfamily.
 
 
 0.749
malF
Maltose transport inner membrane protein.
 
 
 0.734
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.