STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tyrP_1Putative membrane transport protein. (414 aa)    
Predicted Functional Partners:
SBG_0825
Invasin/intimin.
  
     0.670
SBG_1289
Intimin/invasin.
  
     0.574
mtr
Putative amino acid permease.
 
     0.553
SBG_1834
Putative autotransporter.
  
     0.524
puuE_2
4-aminobutyrate aminotransferase.
     
 0.515
SBG_1917
udp-N-acetylglucosamine 4-epimerase.
  
    0.461
SBG_0266
Prophage protein.
  
     0.427
livJ
Amino acid-binding protein.
     
 0.426
SBG_3318
Putative beta-lactamase.
  
    0.419
chiA_2
Putative chitinase.
  
     0.417
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.