STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yhjCHypothetical lysR-family transcriptional regulator. (300 aa)    
Predicted Functional Partners:
SBG_1839
Nitrogen assimilation regulatory protein (pseudogene); This CDS appears to have been subject to a deletion event removing the 3' end.
  
     0.735
ydcI
Putative LysR0-family transcriptional regulatory protein.
  
     0.692
gltC
Putative transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.689
gbpR
Putative transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.679
gltR_2
Putative regulatory protein; Belongs to the LysR transcriptional regulatory family.
  
     0.623
gltR_1
Putative LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.603
abgR
Putative LysR-family transcriptional regulatory protein; Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon.
  
     0.603
yhjD
Putative membrane protein.
       0.577
lrhA
NADH dehydrogenase operon transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.556
tdcA
TDC operon transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
     0.527
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.