STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lpfBFimbrial chaperone protein. (232 aa)    
Predicted Functional Partners:
lpfE
Fimbrial protein.
 
 
 0.984
lpfC
Outer membrane fimbrial usher protein.
 
 
 0.964
lpfD
Fimbrial protein.
  
 
 0.957
lpfA
Long polar fimbria protein A.
 
 
 0.939
sbdC
Fimbrial membrane usher protein.
 
 
 0.882
bcfC
Fimbrial usher protein.
 
   0.862
sbbC
Outer membrane fimbrial usher protein.
 
   0.862
sthC
Outer membrane usher protein.
 
   0.862
sbaD
Outer membrane fimbrial usher protein.
 
   0.861
sbfB
Fimbrial outer membrane usher protein.
 
   0.861
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.