STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lpfALong polar fimbria protein A. (178 aa)    
Predicted Functional Partners:
lpfB
Fimbrial chaperone protein.
 
 
 0.939
lpfC
Outer membrane fimbrial usher protein.
 
 
 0.933
celB
PTS system, cellobiose-specific IIC component.
      
 0.833
invA
Putative secretory protein (associated with virulence).
   
  
 0.830
sthC
Outer membrane usher protein.
 
   0.826
sthB
Putative fimbrial chaperone protein.
 
   0.825
sbdC
Fimbrial membrane usher protein.
 
 
 0.822
bcfC
Fimbrial usher protein.
 
 
 0.819
bcfB
Fimbrial chaperone.
 
   0.810
bcfG
Fimbrial chaperone.
  
   0.808
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.