STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yhjYPutative membrane protein. (234 aa)    
Predicted Functional Partners:
yehY
Putative permease transmembrane component.
      
 0.832
SBG_3236
Putative inner membrane protein (pseudogene); Signal peptide predicted for SBG3235 by SignalP 2.0 HMM (Signal peptide probabilty 0.868) with cleavage site probability 0.426 between residues 29 and 30.
       0.701
mcbR
Putative regulatory protein.
      
 0.616
tag
3-methyladenine DNA glycosylase I, constitutive.
  
    0.568
yiaC
Putative acetyltransferase.
       0.522
yjgB
Putative zinc-type alcohol dehydrogenase.
      
 0.518
SBG_1663
Conserved hypothetical protein.
      
 0.495
SBOV03131
Putative secreted protein.
      
 0.473
rof
ROF protein.
      
 0.445
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.