STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylAD-xylose isomerase; Belongs to the xylose isomerase family. (440 aa)    
Predicted Functional Partners:
xylB
Xylulose kinase.
 
 
 0.995
fruA
PTS system, fructose-specific IIBC component.
     
 0.931
yajF
Hypothetical ROK-family protein.
    
 0.910
fruA_7
PTS-family membrane transport protein, component IIBC.
     
 0.906
manP
PTS-family membrane transport protein, component IIB.
     
 0.906
gutB_4
Putative zinc-type alcohol dehydrogenase; The differing N-termini.
     
 0.903
fruA_6
PTS-family membrane transport protein, component IIB.
     
 0.901
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
  
   
 0.853
xylR
Xylose operon regulatory protein.
 
   
 0.835
lacZ
Beta-galactosidase.
    
 0.830
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.