Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| infA | rplD | SBG_0810 | SBG_3048 | Initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 50S ribosomal subunit protein L4; Forms part of the polypeptide exit tunnel. | 0.997 |
| infA | rpsB | SBG_0810 | SBG_0207 | Initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.987 |
| infA | rpsC | SBG_0810 | SBG_3043 | Initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 30S ribosomal subunit protein S3; Belongs to the universal ribosomal protein uS3 family. | 0.996 |
| infA | rpsE | SBG_0810 | SBG_3032 | Initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 30S ribosomal subunit protein S5. | 0.996 |
| infA | rpsG | SBG_0810 | SBG_3056 | Initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 30S ribosomal subunit protein S7. | 0.996 |
| infA | rpsJ | SBG_0810 | SBG_3050 | Initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 30S ribosomal subunit protein S10. | 0.995 |
| infA | rpsL | SBG_0810 | SBG_3057 | Initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 30S ribosomal subunit protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.995 |
| infA | rpsQ | SBG_0810 | SBG_3040 | Initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 30S ribosomal subunit protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.995 |
| infA | selB | SBG_0810 | SBG_3265 | Initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | Selenocysteine-specific elongation factor. | 0.984 |
| rplD | infA | SBG_3048 | SBG_0810 | 50S ribosomal subunit protein L4; Forms part of the polypeptide exit tunnel. | Initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 0.997 |
| rplD | rpsB | SBG_3048 | SBG_0207 | 50S ribosomal subunit protein L4; Forms part of the polypeptide exit tunnel. | 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.998 |
| rplD | rpsC | SBG_3048 | SBG_3043 | 50S ribosomal subunit protein L4; Forms part of the polypeptide exit tunnel. | 30S ribosomal subunit protein S3; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
| rplD | rpsE | SBG_3048 | SBG_3032 | 50S ribosomal subunit protein L4; Forms part of the polypeptide exit tunnel. | 30S ribosomal subunit protein S5. | 0.999 |
| rplD | rpsG | SBG_3048 | SBG_3056 | 50S ribosomal subunit protein L4; Forms part of the polypeptide exit tunnel. | 30S ribosomal subunit protein S7. | 0.999 |
| rplD | rpsJ | SBG_3048 | SBG_3050 | 50S ribosomal subunit protein L4; Forms part of the polypeptide exit tunnel. | 30S ribosomal subunit protein S10. | 0.999 |
| rplD | rpsL | SBG_3048 | SBG_3057 | 50S ribosomal subunit protein L4; Forms part of the polypeptide exit tunnel. | 30S ribosomal subunit protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.999 |
| rplD | rpsQ | SBG_3048 | SBG_3040 | 50S ribosomal subunit protein L4; Forms part of the polypeptide exit tunnel. | 30S ribosomal subunit protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.999 |
| rplD | selB | SBG_3048 | SBG_3265 | 50S ribosomal subunit protein L4; Forms part of the polypeptide exit tunnel. | Selenocysteine-specific elongation factor. | 0.982 |
| rpsB | infA | SBG_0207 | SBG_0810 | 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | Initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 0.987 |
| rpsB | rplD | SBG_0207 | SBG_3048 | 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 50S ribosomal subunit protein L4; Forms part of the polypeptide exit tunnel. | 0.998 |
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