STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBG_3339Conserved hypothetical protein (pseudogene); There appears to have been an insertion into this CDS. (247 aa)    
Predicted Functional Partners:
selA_1
Putative transferase.
 
 
  0.997
edd
6-phosphogluconate dehydratase; Belongs to the IlvD/Edd family.
     
 0.982
agaC_1
Putative PTS system protein.
 
    0.928
kdgK
2-dehydro-3-deoxygluconokinase.
  
 
  0.903
eda
KHG/KDPG aldolase.
     
  0.900
manZ_2
Putative PTS system protein.
 
     0.894
selA_3
Hypothetical protein.
 
    0.832
ptsG
PTS system, glucose-specific IIBC component.
   
 
  0.802
malX
PTS system, maltose and glucose-specific IIABC component.
   
 
  0.802
ptsG_1
PTS system, sugar transport protein IIABC component.
   
 
  0.802
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.