STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zraRPutative NtrC-family transcriptional regulator. (932 aa)    
Predicted Functional Partners:
SBG_3344
Putative PTS system protein.
 
  
 0.978
manX_1
PTS-family sugar transport protein component IIB.
 
  
 0.943
manX_3
PTS system, IIa component.
 
  
 0.907
rpoN
RNA polymerase sigma-54 factor (sigma-N).
 
 
 
 0.877
agaC_1
Putative PTS system protein.
 
  
 0.860
levE
Putative PTS system protein.
 
   
 0.842
manZ_2
Putative PTS system protein.
 
  
 0.833
ptsL
PTS system, mannose-specific IIAB component.
 
  
 0.784
agaC_2
PTS system, IIc component.
 
  
 0.599
licR_4
Putative BglB-family transcriptional antiterminator.
 
   
 0.593
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.