STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yidAConserved hypothetical protein. (270 aa)    
Predicted Functional Partners:
yniC
Putative hydrolase.
  
  
 0.639
ydiI
Conserved hypothetical protein.
 
      0.595
gyrB
DNA gyrase subunit B.
       0.551
recF
recF protein; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.
 
     0.531
cyaY
CyaY protein.
      
 0.531
SBG_3686
Putative exported protein.
      
 0.529
yedP
Conserved hypothetical protein.
      
 0.527
SBG_3389
Hypothetical protein.
       0.476
SBG_3390
Hypothetical protein.
       0.467
cyaA
Adenylate cyclase; Belongs to the adenylyl cyclase class-1 family.
      
 0.461
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.