STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBG_3453Hypothetical protein. (142 aa)    
Predicted Functional Partners:
pnuC_2
Putative membrane transport protein.
 
     0.781
SBG_3454
Putative uridine phosphorylase.
 
   
 0.748
rpoD
RNA polymerase sigma-70 factor.
    
 
 0.740
rpoB
DNA-directed RNA polymerase, beta-subunit; Belongs to the RNA polymerase beta chain family.
    
 
 0.712
rpoA
DNA-directed RNA polymerase alpha chain.
   
   0.710
rpoC
DNA-directed RNA polymerase, beta'-subunit.
    
 
 0.689
rpoZ
DNA-directed RNA polymerase omega chain; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.666
rep
ATP-dependent DNA helicase.
       0.547
glpF
Glycerol uptake facilitator protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
 
 
 0.490
torS
Two-component sensor protein histidine protein kinase.
 
 
 
 0.486
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.