STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yigBConserved hypothetical protein. (238 aa)    
Predicted Functional Partners:
ribD
Riboflavin biosynthesis protein RibD.
    
 0.936
ribF
Riboflavin biosynthesis protein RibF; Belongs to the ribF family.
  
 
 0.912
ribH
6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase beta chain).
     
 0.902
ribE
Riboflavin synthase alpha chain.
   
 
 0.902
ybjI
Conserved hypothetical protein.
     
 0.901
ubiB
Flavin reductase.
  
 
  0.901
hpaC
4-hydroxyphenylacetate 3-monooxygenase coupling protein.
     
 0.900
aphA
Class B acid phosphatase precursor; Belongs to the class B bacterial acid phosphatase family.
     
  0.900
yigA
Conserved hypothetical protein.
 
    0.882
xerC
Integrase/recombinase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Binds cooperatively to specific DNA consensus sequences that are separated from XerD binding sites by a short central region, forming the heterotetrameric XerC-XerD complex that recombines DNA substrates. The complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. In the complex XerC specifically exchanges the t [...]
  
    0.872
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.