STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fdhEFdhE protein; Necessary for formate dehydrogenase activity. Belongs to the FdhE family. (309 aa)    
Predicted Functional Partners:
fdoI
Formate dehydrogenase-O gamma subunit.
 
  
 0.991
fdoH
Formate dehydrogenase-O beta subunit; The beta chain is an electron transfer unit containing 4 cysteine clusters involved in the formation of iron-sulfur centers.
 
  
 0.973
fdoG
Formate dehydrogenase-O, major subunit; Carries a UGA stop codon which is readthrough as an opal codon by the selenocysteine tRNA.
 
 
 
 0.973
fdhD
FdhD protein; Required for formate dehydrogenase (FDH) activity. Belongs to the FdhD family.
 
  
 0.931
fdnI
Formate dehydrogenase, nitrate-inducible,cytochrome b556.
 
  
 0.875
fdnH
Formate dehydrogenase, nitrate-inducible,iron-sulfur subunit.
 
  
 0.815
selB
Selenocysteine-specific elongation factor.
 
   
 0.793
selA
L-seryl-tRNA(Ser) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis; Belongs to the SelA family.
 
   
 0.705
putA
Proline dehydrogenase (proline oxidase); Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
      
 0.641
modE
Putative molybdenum transport protein ModE.
 
   
 0.638
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.