STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBG_3553Putative inner membrane protein. (107 aa)    
Predicted Functional Partners:
SBG_3554
Putative exported protein.
 
   
 0.969
sinR
Putative DNA-binding protein.
 
   
 0.910
SBG_1396
Putative regulatory protein.
  
     0.530
ybdZ
Conserved hypothetical protein.
  
     0.484
yhjD
Putative membrane protein.
  
     0.450
SBG_1450
Putative esterase.
  
     0.443
SBG_2326
Putative exported protein.
  
     0.420
SBG_0488
Putative tetR-family transcriptional regulator.
  
     0.408
yfgF_2
Putative membrane protein.
  
     0.408
licR_4
Putative BglB-family transcriptional antiterminator.
  
     0.405
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.