STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBG_3703Putative type-I secretion protein. (439 aa)    
Predicted Functional Partners:
SBG_3704
Putative type-I secretion protein.
 
 
 0.999
SBG_3702
Putative integral membrane protein.
 
    0.995
SBG_3705
Large repetitive protein; The product of this CDS is composed of multiple degenerate repeats; note similarity to SBG3755 29.701% identity in 3313 aa overlap.
 
    0.995
apxIB_3
Putative type-1 secretion protein.
 
  
 0.991
invE
Cell invasion protein.
   
    0.903
ybjZ
Conserved hypothetical ABC transporter; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.901
spaS
Secretory protein (associated with virulence).
  
    0.886
spaN
Surface presentation of antigens protein (associated with type III secretion and virulence).
   
    0.846
glcR_1
DeoR-family trancriptional regulator.
      
 0.833
yihW
Putative DeoR-family transcriptional regulator.
      
 0.830
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.