STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
melRMelibiose operon regulatory protein. (310 aa)    
Predicted Functional Partners:
melA
Alpha-galactosidase.
 
   
 0.782
araC
Arabinose operon regulatory protein.
  
   
 0.742
rhaR
L-rhamnose operon transcriptional activator.
  
 
0.716
cadC
Transcriptional activator cadC.
  
     0.706
ykgD
Putative transposase (pseudogene); No suitable translational start site but there is a poly A tract that could offer a region for programmed ribosomal frameshifting.
  
     0.700
rob_1
Putative transcriptional regulator.
  
     0.680
soxS
Regulatory protein SoxS.
  
     0.589
ramA
Transcriptional activator RamA.
  
     0.578
marA
Multiple antibiotic resistance protein MarA.
  
     0.573
tfdR
Putative LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
    0.550
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.