STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
appY_2araC family regulatory protein. (291 aa)    
Predicted Functional Partners:
SBG_3753
Putative exported protein.
  
   
 0.899
spaN
Surface presentation of antigens protein (associated with type III secretion and virulence).
   
    0.863
SBG_3762
Putative GerE family regulatory protein.
  
  
 0.856
rob_1
Putative transcriptional regulator.
  
     0.727
SBG_3703
Putative type-I secretion protein.
  
    0.721
SBG_3704
Putative type-I secretion protein.
  
    0.693
ykgD
Putative transposase (pseudogene); No suitable translational start site but there is a poly A tract that could offer a region for programmed ribosomal frameshifting.
  
     0.687
rhaR_1
Putative regulatory protein.
 
 
 0.674
rhaR
L-rhamnose operon transcriptional activator.
  
 
 0.615
invE
Cell invasion protein.
   
    0.576
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.